To support the psRNATarget, please cite: Xinbin Dai and Patrick X. Zhao, psRNATarget: A Plant Small RNA Target Analysis Server, Nucleic Acids Research, 2011, W155-9. doi: 10.1093/nar/gkr319.
The Zhao Bioinformatics Laboratory
psRNATarget: A Plant Small RNA Target Analysis Server   
  About Citation Analysis
Location:  Analysis
 
User-submitted small RNAs / preloaded transcripts Preloaded small RNAs / user-submitted transcripts User-submitted small RNAs / user-submitted transcripts
Upload small RNA sequence(s) in FASTA format:            [Load demo data]    

or paste sequences below:

- file / input sequence size limit: 15M.
- invalid small RNAs will be ignored during analysis.     
 
  Select a preloaded transcript/genomic library for target search:
Selected library:
- Request to add / update a transcript library.
 
Maximum expectation (* Prefer lower false positive prediction rate? Please set a more stringent cut-off threshold [0-2.0]; Prefer higher prediction coverage? Please set a more relaxed cut-off threshold [4.0-5.0]):     (range: 0-5.0)      
Length for complementarity scoring (hspsize):     (range: 15-30bp)      
Target accessibility - allowed maximum energy to unpair the target site (UPE):     (range: 0-100, less is better)      
Flanking length around target site for target accessibility analysis   bp in upstream / bp in downstream        
Range of central mismatch leading to translational inhibition:      -    nt       
 
             


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